List of all proteins tested and their localisations
results03

This webpage presents the list of all proteins which were tested for their involvement in NGF induced neurite outgrowth in PC12 cells. Proteins are sorted according to their subcellular localisation in Vero cells. To look at the detailed analysis of the protein involvement in the neurite outgrowth click on “protein name” link. To see the overview of protein’s bioinformatic data click on the “SwissprotID” link.

Plasma membrane

Protein Name

Swissprot ID

Accession Number / clone ID

localisation in Vero cells

localisation in PC12 cells

Actin-like protein 6A

O96019

AL136608 /
DKFZp564J2222

plasma membrane

plasma membrane

Hypothetical protein

Q9H097

AL136887 /
DKFZp434K1172

plasma membrane

plasma membrane

Hypothetical protein

Q8N3J6

AL834270 /
DKFZp761G128

plasma membrane

plasma membrane

Synaptotagmin-3,SYT3 (control)

Q9BQG1

AL136594 /
DKFZp761O132

plasma membarne + endosomes, lysosomes

vesicles

MARCKS-like 1

P49006

AL713653 /
DKFZp547C2413

plasma membrane

unknown

Junctional adhesion molecule 1, JAM1

Q9Y624

AL136649 /
DKFZp564H1562

plasma membrane + junctional adhesions

plasma membrane

htes3_73k11

 

DKFZp434K1173

plasma membrane + mitochondria

no NGF - nucleus + cytoplasm, with NGF - vesicles

Hypothetical protein

Q8N3L4

AL834247 /
DKFZp451E012

plasma membrane + cytoplasm

vesicles + cytoplasm

Hypothetical protein

Q8N3S9

AL831962 /
DKFZp451D112

plasma membrane + actin

plasma membrane + golgi + neurite tips

coiled-coil domain containing 8, CCDC8

Q9H0W5

AL136609 /
DKFZp564K0322

plasma membrane

plasma membrane + neurite tips

Hypothetical protein

Q9H0H6

AL136793 /
DKFZp434A171

plasma membrane

plasma membrane

frizzled homolog 7, FZD7

Q96B74

BC015915 /
IMAGE:4549389

plasma membrane + ER

plasma membrane + golgi

cholinergic receptor, muscarinic 2, CHRM2, isoform a

Q4VBK6

AL832585 /
DKFZp451H2216

plasma membrane + ER + golgi

plasma membrane

Hypothetical protein

Q69YW2

AL137507 /
DKFZp761P211

plasma membrane + ER + golgi

plasma membrane + golgi

TBC1 domain family member 3, Rab GTPase-activating protein

Q8IZP1

AL136860 /
DKFZp434P2235

plasma membrane

plasma membrane

Transmembrane 4 superfamily member 10, TM4SF10

Q9BQJ4

AL136550 /
DKFZp761J17121

plasma membrane

plasma membrane + vesicles

Annexin A4 (control)

P09525

 

not tested

plasma membrane + cytoplasm

Calcium/calmodulin-dependent protein kinase type II beta (control)

Q13554

 

not tested

plasma membrane + cytoplasm

Plasma membrane + Golgi

Protein Name

Swissprot ID

Accession Number / clone ID

localisation in Vero cells

localisation in PC12 cells

Guanine nucleotide binding protein, alpha inhibiting activity polypeptide1

Q9UGA4

AL049933 /
DKFZp564K1216

plasma membrane + golgi

plasma membrane + golgi

Integral membrane protein 2C, Transmembrane protein BRI3

Q9NQX7

AL136603 /
DKFZp564L1216

plasma membrane + golgi + ER

golgi

Hypothetical protein

Q9BQG9

AL136580 /
DKFZp761H2024

plasma membrane + golgi

plasma membrane + golgi

GPR85, Super conserved receptor expressed in brain 2

Q9NPD1

AL161959 /
DKFZp761L08121

plasma membrane + golgi + ER

plasma membrane + golgi + vesicles

Protein kinase STYK1

Q9NSH1

AL353940 /
DKFZp761P1010

plasma membrane + golgi

plasma membrane + golgi + vesicles

prominin 1

Q96EN6

BC012089 /
IMAGE:4644690

plasma membrane + golgi

plasma membrane + golgi + vesicles

Complement component C1q receptor, CD93 antigen

Q9NPY3

BC028075 /
IMAGE:5216061

plasma membrane + golgi + ER

plasma membrane + golgi

Protein C20orf98

Q9GZP1

AL136915 /
DKFZp586F1919

plasma membrane + golgi + endosomes, lysosomes

golgi + vesicles

Sodium channel beta-3 subunit, CIB3

Q9NY72

AL136589 /
DKFZp761F182

plasma membrane + golgi + ER

golgi

Hypothetical protein PRO0971, Gamma-BAR splice variant

Q96GG6

BC009485 /
IMAGE:3623656

plasma membrane + golgi

golgi + neurite tips

Synaptoporin (control)

Q8TBG9

AL834457 /
DKFZp547J226

plasma membrane + golgi + ER

plasma membrane + golgi + neurite tips

Transmembrane protein 10,  TM10

Q96PE5

AL834229 /
DKFZp761K0421

plasma membrane + golgi

plasma membrane + golgi

Gamma-BAR, AP-1 interacting protein

Q9H0V0

AL136628 /
DKFZp564C182

plasma membrane + golgi

golgi + neurite tips

Hypothetical protein, zinc and ring finger 1, ZNRF1

Q9H083

AL136903 /
DKFZp434E229

plasma membrane + golgi

plasma membrane + golgi

Synaptosomal-associated protein 25 (SNAP-25) (control)

P60880

 

not tested

plasma membrane + golgi

Golgi

Protein Name

Swissprot ID

Accession Number / clone ID

localisation in Vero cells

localisation in PC12 cells

Hypothetical protein

Q9BQG3

AL136588 /
DKFZp761D112

golgi + ER

golgi

Hypothetical protein

Q9H0W4

AL136610 /
DKFZp564K0822

golgi + ER

cytoplasm

Hypothetical protein

Q9UFC6

AL133049 /
DKFZp434E1315

golgi

golgi

Hypothetical protein

Q9H076

AL136916 /
DKFZp586G1919

golgi

golgi + vesicles

NDRG2 protein

Q9UN36

AL136574 /
DKFZp761J1923

golgi

cytoplasm

NDRG4 protein (Brain development-related molecule 1)

Q9ULP0

AL136584 /
DKFZp761P2324

golgi

cytoplasm

Hypothetical protein

Q9H0B8

AL136861 /
DKFZp434B044

golgi + ER

cytoplasm

Secretory carrier-associated membrane protein 5

Q8N3M4

AL834226 /
DKFZp761D1321

golgi + ER

golgi + vesicles

Hypothetical protein

Q9H0V1

AL136626 /
DKFZp564C012

golgi + ER

golgi + vesicles

Hypothetical protein

Q8N3G9

AL834349 /
DKFZp761H2017

golgi + ER + endosomes, lysosomes

vesicles

Synaptotagmin 13

Q9P2C0

AL512743 /
DKFZp547F213

golgi

golgi + vesicles

ITBA1 protein (CXorf12 protein)

Q14656

BC008203 /
IMAGE:3868838

golgi + ER

golgi + vesicles

Hypothetical protein

Q6UWH4

AL832589 /
DKFZp451L1216

golgi

golgi

Proprotein convertase subtilisin/kexin type 5, preproprotein

Q96EP4

AL834522 /
DKFZp667I0310

golgi + ER

golgi

Deoxyribonuclease gamma precursor, Deoxyribonuclease I-like 3

Q13609

BC015831 /
IMAGE:4723725

golgi

golgi

Surfeit 4

O15260

BX647961 /
DKFZp686P1751

golgi

golgi + vesicles

Ras-related protein Rab-6C (control)

Q9H0N0

AL136727 /
DKFZp566K144

golgi

golgi

Ras-related protein Rab-33B (control)

Q9H082

AL136904 /
DKFZp434G099

golgi

golgi

Coatomer beta subunit (control)

P53618

AL136593 /
DKFZp761K102

golgi

golgi

Ras-related protein Rab-1B (control)

Q9H0U4

AL136635 /
DKFZp564I172

golgi

golgi

Coatomer epsilon subunit

O14579

AL136928 /
DKFZp586A1622

golgi

golgi

Biglycan

P21810

BC002416 /
IMAGE:3162633

golgi + ER

golgi

Vesicle docking protein p115, VDP

Q86TB8

AL832010 /
DKFZp451D234

golgi

golgi

ADP-ribosylation factor-like protein 1, ARL1

P40616

BX537387 /
DKFZp686O2082

golgi

golgi

KIAA1040 Hypothetical protein

Q7Z3U7

BX537415 /
DKFZp686F0546

golgi

golgi

Zinc transporter ZnT-7, Solute carrier family 30

Q8NEW0

BX537375 /
DKFZp686D18111

golgi + endosomes, lysosomes

golgi + neurite tips

Serine protease 23 precursor

O95084

AL136914 /
DKFZp586B0719

golgi

neurite tips

Hypothetical protein

Q9Y4S1

AL080121

golgi + endosomes

golgi + neurite tips

Secreted phosphoprotein 1, SPP-1

Q96IZ1

BC007016 /
IMAGE:4052438

golgi

golgi + neurite tips

SACM1L

Q9NTJ5

AL136831 /
DKFZp434O1328

golgi + ER

golgi

GTP-binding protein SAR1 (COPII-associated small GTPase) (control)

Q9NR31

 

not tested

golgi + cytoplasm

Vesicle-associated membrane protein 2 (Synaptobrevin 2), VAMP2 (control)

Q9BUC2

 

not tested

golgi + neurite tips

GTP restricted dominant negative mutant of Sar1p GTPase (Sar1pH79G) (control)

 

 

not tested

golgi

Cytoskeleton

Protein Name

Swissprot ID

Accession Number / clone ID

localisation in Vero cells

localisation in PC12 cells

Hypothetical protein

Q9H0T6

AL136646 /
DKFZp564B1162

cytoskeleton - focal adhesions

plasma membrane

Epithelial protein lost in neoplasm, EPLIN

Q9UHB6

AL136911 /
DKFZp586I1918

cytoskeleton - actin

cytoskeleton- actin

Hypothetical protein, DNA polymerase-transactivated protein 6

Q9NTW4

AL110124 /
DKFZp564A2416

cytoskeleton - microtubules

cytoskeleton - microtubules

Hypothetical protein

Q9H0M7

AL136730 /
DKFZp434H2010

cytoskeleton - focal adhesions

plasma membrane

Gamma-1-syntrophin, G1SYN, Syntrophin 4

Q9NSN8

AL161971 /
DKFZp761I2312

cytoskeleton - filaments

cytoskeleton + cytoplasm + nucleus

Hypothetical protein

 

BI828924 /
IMAGE:5166884

cytoskeleton - microtubules

cytoskeleton - microtubules

Rho/rac guanine nucleotide exchange factor (GEF) 2

Q9H023

AL512715 /
DKFZp547L106

cytoskeleton - microtubules

cytoskeleton - microtubules + cytoplasm

Neuronal-specific septin 3

Q8N3P3

AL833942 /
DKFZp761P16121

cytoskeleton

unknown + neurite tips

intracellular membrane-associated calcium-independent phospholipase A2 gamma variant

Q8N3I3

AL834147 /
DKFZp761P18121

cytoskeleton

unknown + neurite tips

Kinesin-like protein KIF3C

O14782

 

not tested

cytoplasm + neurite tips

Microtubule-associated protein tau

P10636

BC000558 /
IMAGE:3162763

cytoskeleton - microtubules

cytoskeleton - microtubules

Kinesin family member 23, KIF23

Q8WVP0

BC017705 /
IMAGE:4420248

cytoskeleton - microtubules

cytoskeleton - microtubules + neurite tips

Angiomotin-like 1

Q8IY63

BX648729 /
DKFZp451H0710

cytoskeleton

unknown

Hypothetical protein

 

AL832686 /
DKFZp313C0434

cytoskeleton - actin

cytoskeleton

Leiomodin 3, LMOD3

Q5JPG6

AL832033 /
DKFZp451P024

cytoskeleton - actin + cytoplasm

cytoskeleton - microtubules + cytoplasm

Hypothetical protein

 

AL833438 /
DKFZp313E0842

cytoskeleton - actin

cytoskeleton

Hypothetical protein

 

AL832031 /
DKFZp451O084

cytoskeleton - actin

cytoskeleton + aggregates

Myopalladin, MYPN

Q86T37

AL832379 /
DKFZp451K027

cytoskeleton - actin

aggregates

Spermatogenesis associated protein 7, Spermatogenesis associated protein HSD3

Q9P0W8

AL136604 /
DKFZp564F2122

cytoskeleton - microtubules

cytoskeleton - microtubules

G2/mitotic-specific cyclin B2

O95067

AL080146 /
DKFZp434B174

cytoskeleton - microtubules + aggregates

cytoskeleton + cytoplasm

Hypothetical protein

Q9BQI0

AL833896 /
DKFZp761N011

cytoskeleton - actin

cytoskeleton + cytoplasm

Synaptopodin

Q8N3V7

AL831818 /
DKFZp451G172

cytoskeleton - actin

cytoskeleton

Microtubule-associated protein, RP/EB family, member 3

Q9UPY8

 

not tested

cytoskeleton - microtubules

Microtubule-associated protein, RP/EB family, member 2

Q15555

BC007318 /
IMAGE:2989643

cytoskeleton - microtubules

cytoskeleton - microtubules + cytoplasm

Hypothetical protein

Q9BQI0

AL833896 /
DKFZp761N011

cytoskeleton - actin

cytoskeleton + golgi + cytoplasm

Sorbin and SH3 domain-containing protein 1, SH3P12

Q9UFT2

AL117472 /
DKFZp586P1422

cytoskeleton - focal adhesions

cytoskeleton + neurite tips

Hypothetical protein

Q9Y4P9

AL080154 /
DKFZp434I114

cytoskeleton - microtubules

cytoskeleton - microtubules + nucleus

Hypothetical protein

Q9H0Q7

AL136694 /
DKFZp564J047

cytoskeleton - microtubules

cytoskeleton - microtubules

CRIB-containing BORG2 protein

Q9UKI2

AL136842 /
DKFZp434A0530

cytoskeleton - actin

cytoskeleton + cytoplasm

Kinesin family member 2C, KIF2C

Q99661

BC014924 /
IMAGE:3909438

cytoskeleton - microtubules

cytoplasm

Synaptopodin-2, SYP-2

Q9UMS6

AL833547 /
DKFZp686M023

cytoskeleton - actin

cytoskeleton - microtubules

Kinesin-associated protein 3, KAP3

Q5VXW0

 

not tested

cytoplasm

Tubulin alpha 2 , TUBA2 (control)

Q13748

 

not tested

cytoskeleton - microtubules

actin beta, ACTB (control)

P60709

 

not tested

cytoskeleton - actin

Microtubule-associated protein, RP/EB family, member 1 (control)

Q15691

 

not tested

cytoskeleton - microtubules

Cell division cycle 42, CDC42 (control)

P60953

 

not tested

cytoplasm

Transforming protein RhoA (control)

P61586

 

not tested

cytoplasm